Description

A dematiaceous fungus was isolated from a patient’s skin scraping and was identified using morphological approaches. However, this isolate was unidentifiable by the morphological characteristics. Based on the internal transcribed spacer (ITS)-based PCR amplification and ITS sequence-based phylogenetic analysis, it was only identified to family level as Herpotrichiellaceae.
 

Morphological

On Sabouraud Dextrose Agar, the isolate appeared as black colony with wrinkled and convoluted surface. Microscopic images showed the uniseptated or biseptated conidia arranged in a chain.

 
 
 
 
 
 
 

References

1. Currently not available.
 
 
 
 

 

Herpotrichiellaceae sp. UM 238

 
  • Description
  • Morphological
  • References
  • Taxonomic Classification
  • Assembly
  • Gene Models
  • Gene Annotations
  • External Links
  • Sequencing Stats
  • Download Data (Contigs)
  • Download Data (Amino Acids)
  • Download Data (Nucleotides)
  • GBrowse Link
  •  

    Taxonomic Classification

     
    Kingdom: Fungi
    Phylum: Ascomycota
    Class: Eurotiomycetes
    Order: Chaetothyriales
    Family: Herpotrichiellaceae
    Genus: -
    Species: Herpotrichiellaceae sp.

     

    Strain Details

     
    Stock Number1171
    Morphological Identity-
    Molecular IdentityHerpotrichiellaceae sp.
    Isolation LocationSkin scraping
    Collection Date11/3/2011
    Isolation CountryMalaysia
    AccessionJX966560
     

     

    Assembly

     
    Assembly size(bp): 28,370,377
    Number of contigs: 232
    Number of contigs (>=200bp): 217
    Total contigs size(bp): 28,366,086
    Contigs N50(bp): 270,646
    Contigs GC content(%): 49.83
    Number of scaffolds (>=1000bp): 128
    Total scaffolds size(bp): 28,370,377
    Scaffolds N50(bp): 455,601
    Scaffolds GC content(%): 49.83

    Gene Models

     
    Number of predicted genes (>=99bp): 9,409
    Average gene length: 1,544
    Average number of exons per gene: 1.93
    rRNAs: 9
    tRNAs: 67

    Gene Annotations

     
    KEGG : 0
    EC :
    GO :
    KOG :
    PFAM :
    Interpro :
    CAZyme :
    CAZyme Unique :
    Secondary Metabolite :
    Peptidase :
    Peptidase Unique :
    Virulence Factor :

       
     
  • NCBI Taxonomy
  • Organism Platform Read type Library size(bp) Number of reads Read length(bp) Total read size(bp) Estimated genome size(Mbp) Sequencing coverage(X)
    Herpotrichiellaceae Illumina GA II Small insert 350 227,952,804 90 20,515,752,360 27.5 - 31.1 660